A roadmap to advance exposomics through federation of data.
Abstract
The scale of the human exposome, which covers all environmental exposures encountered from conception to death, presents major challenges in managing, sharing, and integrating a myriad of relevant data types and available data sets for the benefit of exposomics research and public health. By addressing these challenges, the exposomics research community will be able to greatly expand on its ability to aggregate study data for new discoveries, construct and update novel exposomics data sets for building artificial intelligence and machine learning-based models, rapidly survey emerging issues, and advance the application of data-driven science. The diversity of the field, which spans multiple subfields of science disciplines and different environmental contexts, necessitates adopting data federation approaches to bridge between numerous geographically and administratively separated data resources that have varying usage, privacy, access, analysis, and discoverability capabilities and constraints. This paper presents use cases, challenges, opportunities, and recommendations for the exposomics community to establish and mature a federated exposomics data ecosystem.
Author List
Members of the Exposomics Consortium*
The Exposomics Consortium consists of participants in the NIEHS Catalytic Workshop Series on the Exposome. Members were required to opt-in to the roster below.
| Name | Institution | Country |
|---|---|---|
| Jankowska, Marta (Ph.D.) | Beckman Research Institute, City of Hope | United States |
| Peluso, Alina () | DOE | United States |
| He, Jingxuan () | University of Southern California | United States |
| walker, ryan (Ph.D.) | Mount Sinai School of Medicine | United States |
| Motsinger-Reif, Alison (Ph.D.) | NIEHS | United States |
| Holmes, Philip () | NCIT | United States |
| Adebamowo, Clement (Prof.) | University of Maryland at Baltimore | United States |
| Dolinoy, Dana (Ph.D.) | University of Michigan - Ann Arbor | United States |
| Chatziioannou, Anastasia Chrysovalantou (Ph.D.) | University of Crete | Greece |
| Stanek, Lindsay () | EPA | United States |
| Pan, Shudi () | University of Southern California | United States |
| Teitelbaum, Susan (Ph.D.) | Icahn School of Medicine at Mount Sinai | United States |
| CHUNG, Ming Kei (Ph.D.) | Harvard University | United States |
| Gullapalli, Rama (M.D.,Ph.D.) | University of New Mexico | United States |
| Langston, Mike (Prof.) | University of Tennessee - Knoxville | United States |
| Rushing, Blake (Ph.D.) | University of North Carolina at Chapel Hill | United States |
| Zhang, Xinyue (Ph.D.) | Stanford University | United States |
| Cui, Yuxia (Ph.D.) | NIEHS | United States |
| Dierickx, Erin (Ms.) | University of Connecticut | United States |
| Hart, Jaime (Sc.D.) | Harvard University | United States |
| Lai, Yunjia (Ph.D.) | Columbia University | United States |
| Ruden, Douglas (Ph.D.) | Wayne State University | United States |
| Cheng, Qiwen () | Arizona State University, Tempe Campus | United States |
| KANNAN, srimathik@gmail.com (Ph.D.) | CloudAspirers | United States |
| Konstantinou, Corina (Ms.) | Cyprus University of Technology | Cyprus |
| LaSalle, Janine (Ph.D.) | University of California, Davis | United States |
| Penning, Trevor (Ph.D.) | University of Pennsylvania | United States |
| Parker, Graham (Ph.D.) | Wayne State University / School of Medicine | Canada |
| Noren Hooten, Nicole (Ph.D.) | NIH | United States |
| Wilson, Ander (Ph.D.) | Colorado State University | United States |
| Scholl, Elizabeth (Ph.D.) | Sciome LLC | United States |
| Gaulke, Christopher (Ph.D.) | University of Illinois at Urbana-Champaign | United States |
| Ji, Hong (Ph.D.) | University of California, Davis | United States |
| Page, Grier (Ph.D.) | RTI International | United States |
| Quintana, Penelope J E (Ph.D.) | San Diego State University | United States |
| Du, Xiuxia (Prof.) | University of North Carolina at Charlotte | United States |
| Paul, Kimberly (Ph.D.) | University of California, Los Angeles | United States |
| Argos, Maria (Ph.D.) | Boston University | United States |
| CHUNG, Ming Kei (Ph.D.) | Chinese University of Hong Kong | Hong Kong |
| Berger, Kimberly (Ph.D.) | Sequoia Foundation | United States |
| Luo, Jiajun (Ph.D.) | University of Chicago | United States |
| Sturla Irizarry, Savannah (Ms.) | University of Michigan - Ann Arbor | United States |
| Shah, Ruchir (Ph.D.) | Sciome LLC | United States |
| Harari, Homero (Ph.D.) | Mount Sinai School of Medicine | United States |
| Giebelhaus, Ryland T. (Mr.) | University of Alberta | Canada |
| Bhutani, Jessie () | NIH | United States |
| Sundseth, Scott (Ph.D.) | International HundredK+ Cohorts Consortium | United States |
| Costello, Elizabeth () | University of Southern California | United States |
| Habre, Rima (Sc.D.) | University of Southern California | United States |
| Vijayakumar , Nisha () | University of South Florida | United States |
| Wu, K. Lily (Ph.D.) | California Environmental Protection Agency | United States |
| Soliman, Ghada (Ph.D.) | City University of New York, Graduate School and University Center | United States |
| Cohen Hubal, Elaine () | EPA | United States |
| Fecho, Karamarie (Ph.D.) | Copperline Professional Solutions, LLC | United States |
| Hanson, Heidi (Ph.D.) | DOE | United States |
| Cooke, Marcus (Ph.D.) | University of South Florida | United States |
| Ouidir, Marion () | INSERM | France |
| Hu, Chiung-Wen (Prof.) | Chung Shan Medical University | Taiwan |
| Hua, Jenna (Ph.D.) | Million Marker | United States |
| Goodrich, Jesse (Ph.D.) | University of Southern California | United States |
| States, J Christopher (Ph.D.) | University of Louisville | United States |
| Cai, Lu (M.D.,Ph.D.) | University of Louisville | United States |
| Schüssler-Fiorenza Rose, Sophia Miryam (M.D.,Ph.D.) | Standford University | United States |
| Manz, Katherine () | University of Michigan - Ann Arbor | United States |
| Shahriar, Mohammad (M.D.) | University of Chicago | United States |
| Schmitt, Charles (Ph.D.) | NIEHS | United States |
| Liang, Donghai (Ph.D.) | Emory University | United States |
| Chao, Mu-Rong (Prof.) | Chung Shan Medical University | Taiwan |
| Tong, Ai Phuong () | University of Washington | United States |
| Zhao, Neil () | University of Michigan - Ann Arbor | United States |
| Ramesh, Aramandla (Ph.D.) | Meharry Medical College | United States |
| Miller, Gary (Ph.D.) | Columbia University | United States |
| Clark, Robert (Ph.D.) | RTI International | United States |
| Liao, Jiawen (Ph.D.) | University of Southern California | United States |
| Adar, Sara D. (Sc.D.) | University of Michigan - Ann Arbor | United States |
| Adamu, Yau () | University of Iowa | United States |
| Hood, Darryl B. (Ph.D.) | Ohio State University | United States |
| Chung, MIng Kei (Ph.D.) | Chinese University of Hong Kong | Hong Kong |
| Gao, Peng (Prof.) | University of Pittsburgh | United States |
| wang, yi (M.D.,Ph.D.) | Canadian Nuclear Laboratories | Canada |
| PRAJAPATI, NIRMALA (Ms.) | Universite Paris-Saclay/ INSERM | France |
| Hu, Hui (Ph.D.) | Harvard University | United States |
| James, Peter (Sc.D.) | Harvard University | United States |
| Grafanaki, Katerina (M.D.,Ph.D.) | University of Patras | Greece |
| Akhtari, Farida (Ph.D.) | NIEHS | United States |
| Whyte, Kathryn (Ph.D.) | Columbia University | United States |
| House, John (M.D.,Ph.D.) | NIEHS | United States |
| Soares, Lissa () | State University of New York at Stony Brook | United States |
| Makris, Konstantinos C. (Prof.) | Cyprus University of Technology | Cyprus |
| Zhang, Qiong () | Henry Ford Health System | United States |
| Yuan, Xin/Jean (Ph.D.) | NIH | United States |
| Rajasekar, Arcot (Raja) (Prof.) | University of North Carolina at Chapel Hill | United States |
| Sun, Yangbo () | University of Tennessee - Memphis | United States |
| Arunachalam, Saravanan (Prof.) | University of North Carolina at Chapel Hill | United States |
| Wu, Lang (Prof.) | University of Hawaii - Manoa | United States |
| Pierce, Brandon () | University of Chicago | United States |
| Akhtari, Farida (Ph.D.) | NIEHS | United States |